Difference between revisions of "Workshops"
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developed by the Nemonic consortium. | developed by the Nemonic consortium. | ||
− | == 2022 | + | = 2022 Speakers == |
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+ | <gallery widths=300px heights=200px mode="nolines"> | ||
+ | Image:Jerome_Lecoq.png|Jérôme Lecoq, Allen Institute | ||
+ | Imge:Xin_Ye.png|Xin Ye, BU | ||
+ | Image:Andrea.png|Andrea Giovannucci, UNC Chapel Hill | ||
+ | Image:Kaspar_Podgorski.jpg|Kaspar Podgorski, Allen Institute | ||
+ | Image:Simon.jpg|Simon Schultz, Imperial College London | ||
+ | Image:Emily_Gibson.jpg|Emily Gibson, CU Denver | ||
+ | Image:Bruno_Pichler|Bruno Pichler, INSS | ||
+ | Image:Kawasi.jpg|Kawasi Lett, Cornell | ||
+ | Image:Nico_Pegard.jpg|Nico Pegard, UNC Chapel Hill | ||
+ | Image:Darcy_Peterka.jpg|Darcy Peterka, Columbia | ||
+ | Image:Spencer_Smith_UCSB.jpg|Spencer Smith, UC Santa Barbara | ||
+ | |||
+ | </gallery> | ||
+ | |||
+ | ==2022 Videos== | ||
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+ | {{#ev:youtube|https://youtu.be/tHBeF2VNfL0|640|left}} | ||
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+ | {{#ev:youtube|https://youtu.be/63p3tHT6FI0|640|right}} | ||
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+ | |||
+ | {{#ev:youtube|https://youtu.be/rUwIqU6gVvw|640|left}} | ||
+ | |||
+ | {{#ev:youtube|https://youtu.be/FZG1SMwf_CE|640|right}} | ||
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+ | {{#ev:youtube|https://youtu.be/ZGQgpG3ByYY|640|left}} | ||
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+ | {{#ev:youtube|https://youtu.be/OK-EKPIgKFQ|640|right}} | ||
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+ | {{#ev:youtube|https://youtu.be/eAwGQOiSOvE|640|left}} | ||
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+ | {{#ev:youtube|https://youtu.be/aZfpbt-31jw|640|right}} | ||
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+ | {{#ev:youtube|https://youtu.be/CJfCEegMmeQ|640|left}} | ||
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+ | {{#ev:youtube|https://youtu.be/72sT44Y4XZM|640|right}} | ||
− | |||
− | + | <br clear=all> | |
+ | ==2022 Software Tutorials== | ||
− | [[ | + | [https://github.com/AllenInstitute/deepinterpolation/blob/master/examples/GoogleColab_example_Ophys__Finetuning_and_Inference_Workshop.ipynb| Ophys Finetuning and Inference - Jérôme Lecoq] |
+ | |||
+ | [https://github.com/UNC-optics/Introduction-to-holography| Introduction to Holography - Nico Pégard] | ||
+ | |||
+ | [https://github.com/UNC-optics/DeepCGH|Deep CGH GitHub - Nico Pégard] | ||
+ | |||
+ | [https://colab.research.google.com/drive/1s9zPDb6TArwB4FSUBiUBIuVr9SdtrXnM?usp=sharing| DeepCGH: 3D computer generated holography using deep learning - Nico Pégard] | ||
+ | |||
+ | [https://colab.research.google.com/drive/1vkp-uPV8tKavmX12bcN2L-jYH8_MgmHL?usp=sharing| CaImAn’s Demo pipeline - Andrea Giovannucci] | ||
+ | |||
+ | [https://github.com/flatironinstitute/CaImAn| CaImAn GitHub - Andrea Giovannucci] | ||
== 2021 Speakers == | == 2021 Speakers == | ||
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Image:Emily_Gibson.jpg|Emily Gibson, CU Denver | Image:Emily_Gibson.jpg|Emily Gibson, CU Denver | ||
Image:Andrea.png|Andrea Giovannucci, UNC Chapel Hill | Image:Andrea.png|Andrea Giovannucci, UNC Chapel Hill | ||
− | Image:Simon.jpg|Simon Schultz, Imperial | + | Image:Simon.jpg|Simon Schultz, Imperial College London |
Image:Spencer_Smith_UCSB.jpg|Spencer Smith, UC Santa Barbara | Image:Spencer_Smith_UCSB.jpg|Spencer Smith, UC Santa Barbara | ||
Revision as of 20:06, 28 February 2022
The Nemonic project holds a yearly workshops at UC Santa Barbara to help train personnel from other institutions on how to create and use novel multiphoton neuroimaging instrumentation developed by the Nemonic consortium.
Contents
2022 Speakers =
- Jerome Lecoq.png
Jérôme Lecoq, Allen Institute
- Imge:Xin Ye.png
Xin Ye, BU
- Bruno Pichler
Bruno Pichler, INSS
2022 Videos
2022 Software Tutorials
Ophys Finetuning and Inference - Jérôme Lecoq
Introduction to Holography - Nico Pégard
DeepCGH: 3D computer generated holography using deep learning - Nico Pégard
CaImAn’s Demo pipeline - Andrea Giovannucci
CaImAn GitHub - Andrea Giovannucci
2021 Speakers
2021 Videos
2021 Software Tutorials
DeepCGH: 3D computer generated holography using deep learning - Nico Pegard
CaImAn’s Demo pipeline - Andrea Giovannucci
Complete pipeline for online processing using CaImAn Online (OnACID) - Andrea Giovannucci
Demo pipeline for processing voltage imaging data - Andrea Giovannucci
2020 Speakers
2020 Videos
2020 Workshop Slideshows
Open Platforms for Two- and Three-Photon Microscopy - Rick Ayer
Fast and scalable brain imaging data at single-cell resolution - Andrea Giovannucci
3D-SHOT with Computer Generated Holography at high speed and with high performance - Nicolas Pegard
Advances in two-dimensional spatial frequency modulation imaging - Jeff Squier
2020 Related Resources
https://www.youtube.com/watch?v=DLTaqzz8hJM&feature=youtu.be
2019 Speakers
2019 Workshop Slideshows
Fast and scalable calcium imaging data analysis with CaImAn - Andrea Giovannucci
Robotically automated, two-photon targeted patch clamp physiology - Simon Schultz
High Speed Two-Photon Tomography - Kaspar Podgorski
Extending multiphoton microscopy to 3D brain imaging in freely moving mice - Emily Gibson
Darcy Peterka's 2019 Nemonic workshop talk - Darcy Peterka
2019 Related Resources
CaImAn: an open source tool for scalable calcium imaging data analysis[1]
Robotic Automation of In Vivo Two-Photon Targeted Whole-Cell Patch-Clamp Electrophysiology[2]
Progress in automating patch clamp cellular physiology[3]
ABLE: An Activity-Based Level Set Segmentation Algorithm for Two-Photon Calcium Imaging Data[4]
High speed functional imaging with source localized multifocal two-photon microscopy[5]
Building a two-photon microscope is easy[6]
See Also