Difference between revisions of "Workshops"

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developed by the Nemonic consortium.
 
developed by the Nemonic consortium.
  
== 2022 Workshop ==
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= 2022 Speakers ==
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<gallery widths=300px heights=200px mode="nolines">
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Image:Jerome_Lecoq.png|Jérôme Lecoq, Allen Institute
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Imge:Xin_Ye.png|Xin Ye, BU
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Image:Andrea.png|Andrea Giovannucci, UNC Chapel Hill
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Image:Kaspar_Podgorski.jpg|Kaspar Podgorski, Allen Institute
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Image:Simon.jpg|Simon Schultz, Imperial College London
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Image:Emily_Gibson.jpg|Emily Gibson, CU Denver
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Image:Bruno_Pichler|Bruno Pichler, INSS
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Image:Kawasi.jpg|Kawasi Lett, Cornell
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Image:Nico_Pegard.jpg|Nico Pegard, UNC Chapel Hill
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Image:Darcy_Peterka.jpg|Darcy Peterka, Columbia
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Image:Spencer_Smith_UCSB.jpg|Spencer Smith, UC Santa Barbara
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</gallery>
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==2022 Videos==
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{{#ev:youtube|https://youtu.be/tHBeF2VNfL0|640|left}}
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{{#ev:youtube|https://youtu.be/63p3tHT6FI0|640|right}}
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{{#ev:youtube|https://youtu.be/rUwIqU6gVvw|640|left}}
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{{#ev:youtube|https://youtu.be/FZG1SMwf_CE|640|right}}
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{{#ev:youtube|https://youtu.be/ZGQgpG3ByYY|640|left}}
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{{#ev:youtube|https://youtu.be/OK-EKPIgKFQ|640|right}}
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{{#ev:youtube|https://youtu.be/eAwGQOiSOvE|640|left}}
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{{#ev:youtube|https://youtu.be/aZfpbt-31jw|640|right}}
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{{#ev:youtube|https://youtu.be/72sT44Y4XZM|640|right}}
  
We will host our 2022 workshop February 23-25. '''Please click the link below''' to download an application. Applications are now being accepted on a rolling basis.
 
  
[[File:Nemonic_Workshop_2022_Application_Updated.pdf]]
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<br clear=all>
  
  
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==2022 Software Tutorials==
  
[[File:Nemonic_2022_flyer.png|center|800px]]
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[https://github.com/AllenInstitute/deepinterpolation/blob/master/examples/GoogleColab_example_Ophys__Finetuning_and_Inference_Workshop.ipynb| Ophys Finetuning and Inference - Jérôme Lecoq]
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[https://github.com/UNC-optics/Introduction-to-holography| Introduction to Holography - Nico Pégard]
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[https://github.com/UNC-optics/DeepCGH|Deep CGH GitHub - Nico Pégard]
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[https://colab.research.google.com/drive/1s9zPDb6TArwB4FSUBiUBIuVr9SdtrXnM?usp=sharing| DeepCGH: 3D computer generated holography using deep learning - Nico Pégard]
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[https://colab.research.google.com/drive/1vkp-uPV8tKavmX12bcN2L-jYH8_MgmHL?usp=sharing| CaImAn’s Demo pipeline - Andrea Giovannucci]
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[https://github.com/flatironinstitute/CaImAn| CaImAn GitHub - Andrea Giovannucci]
  
 
== 2021 Speakers ==
 
== 2021 Speakers ==
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Image:Emily_Gibson.jpg|Emily Gibson, CU Denver
 
Image:Emily_Gibson.jpg|Emily Gibson, CU Denver
 
Image:Andrea.png|Andrea Giovannucci, UNC Chapel Hill
 
Image:Andrea.png|Andrea Giovannucci, UNC Chapel Hill
Image:Simon.jpg|Simon Schultz, Imperial college London
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Image:Simon.jpg|Simon Schultz, Imperial College London
 
Image:Spencer_Smith_UCSB.jpg|Spencer Smith, UC Santa Barbara
 
Image:Spencer_Smith_UCSB.jpg|Spencer Smith, UC Santa Barbara
  

Revision as of 20:06, 28 February 2022


The Nemonic project holds a yearly workshops at UC Santa Barbara to help train personnel from other institutions on how to create and use novel multiphoton neuroimaging instrumentation developed by the Nemonic consortium.

2022 Speakers =

2022 Videos








2022 Software Tutorials

Ophys Finetuning and Inference - Jérôme Lecoq

Introduction to Holography - Nico Pégard

CGH GitHub - Nico Pégard

DeepCGH: 3D computer generated holography using deep learning - Nico Pégard

CaImAn’s Demo pipeline - Andrea Giovannucci

CaImAn GitHub - Andrea Giovannucci

2021 Speakers

2021 Videos






2021 Software Tutorials

DeepCGH: 3D computer generated holography using deep learning - Nico Pegard

CaImAn’s Demo pipeline - Andrea Giovannucci

Complete pipeline for online processing using CaImAn Online (OnACID) - Andrea Giovannucci

Demo pipeline for processing voltage imaging data - Andrea Giovannucci

2020 Speakers


2020 Videos





2020 Workshop Slideshows

Multiphoton imaging of hippocampal place cell network activity in mouse models of neurodegenerative disease - Simon Schultz

Open Platforms for Two- and Three-Photon Microscopy - Rick Ayer

Fast and scalable brain imaging data at single-cell resolution - Andrea Giovannucci

3D-SHOT with Computer Generated Holography at high speed and with high performance - Nicolas Pegard

Advances in two-dimensional spatial frequency modulation imaging - Jeff Squier

2020 Related Resources

https://www.youtube.com/watch?v=DLTaqzz8hJM&feature=youtu.be

2019 Speakers


2019 Workshop Slideshows

Fast and scalable calcium imaging data analysis with CaImAn - Andrea Giovannucci

From Holography to 3D-SHOT Multiphoton whole-cell photostimulation in 3D With single neuron resolution and millisecond precision - Nico Pegard

Robotically automated, two-photon targeted patch clamp physiology - Simon Schultz

High Speed Two-Photon Tomography - Kaspar Podgorski

Extending multiphoton microscopy to 3D brain imaging in freely moving mice - Emily Gibson

Darcy Peterka's 2019 Nemonic workshop talk - Darcy Peterka

2019 Related Resources

CaImAn: an open source tool for scalable calcium imaging data analysis[1]

Robotic Automation of In Vivo Two-Photon Targeted Whole-Cell Patch-Clamp Electrophysiology[2]

Progress in automating patch clamp cellular physiology[3]

ABLE: An Activity-Based Level Set Segmentation Algorithm for Two-Photon Calcium Imaging Data[4]

High speed functional imaging with source localized multifocal two-photon microscopy[5]

Building a two-photon microscope is easy[6]

See Also

Big Brain