Workshops

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The Nemonic project holds a yearly workshops at UC Santa Barbara to help train personnel from other institutions on how to create and use novel multiphoton neuroimaging instrumentation developed by the Nemonic consortium.

2022 Speakers

2022 Videos








2022 Software Tutorials

Ophys Finetuning and Inference - Jérôme Lecoq

Introduction to Holography - Nico Pégard

Deep CGH GitHub - Nico Pégard

DeepCGH: 3D computer generated holography using deep learning - Nico Pégard

CaImAn’s Demo pipeline - Andrea Giovannucci

CaImAn GitHub - Andrea Giovannucci

2021 Speakers

2021 Videos






2021 Software Tutorials

DeepCGH: 3D computer generated holography using deep learning - Nico Pegard

CaImAn’s Demo pipeline - Andrea Giovannucci

Complete pipeline for online processing using CaImAn Online (OnACID) - Andrea Giovannucci

Demo pipeline for processing voltage imaging data - Andrea Giovannucci

2020 Speakers


2020 Videos





2020 Workshop Slideshows

Multiphoton imaging of hippocampal place cell network activity in mouse models of neurodegenerative disease - Simon Schultz

Open Platforms for Two- and Three-Photon Microscopy - Rick Ayer

Fast and scalable brain imaging data at single-cell resolution - Andrea Giovannucci

3D-SHOT with Computer Generated Holography at high speed and with high performance - Nicolas Pegard

Advances in two-dimensional spatial frequency modulation imaging - Jeff Squier

2020 Related Resources

https://www.youtube.com/watch?v=DLTaqzz8hJM&feature=youtu.be

2019 Speakers


2019 Workshop Slideshows

Fast and scalable calcium imaging data analysis with CaImAn - Andrea Giovannucci

From Holography to 3D-SHOT Multiphoton whole-cell photostimulation in 3D With single neuron resolution and millisecond precision - Nico Pegard

Robotically automated, two-photon targeted patch clamp physiology - Simon Schultz

High Speed Two-Photon Tomography - Kaspar Podgorski

Extending multiphoton microscopy to 3D brain imaging in freely moving mice - Emily Gibson

Darcy Peterka's 2019 Nemonic workshop talk - Darcy Peterka

2019 Related Resources

CaImAn: an open source tool for scalable calcium imaging data analysis

Robotic Automation of In Vivo Two-Photon Targeted Whole-Cell Patch-Clamp Electrophysiology

Progress in automating patch clamp cellular physiology

ABLE: An Activity-Based Level Set Segmentation Algorithm for Two-Photon Calcium Imaging Data

High speed functional imaging with source localized multifocal two-photon microscopy

Building a two-photon microscope is easy

See Also

Big Brain